3D structure

PDB id
3JCJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
GUGUAG*CGUAGAGAU
Length
15 nucleotides
Bulged bases
3JCJ|1|g|A|702
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3JCJ_140 not in the Motif Atlas
Homologous match to IL_4LFB_031
Geometric discrepancy: 0.1459
The information below is about IL_4LFB_031
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_95727.1
Basepair signature
cWW-L-tSH-L-tHW-tHS-R-cWW-L
Number of instances in this motif group
1

Unit IDs

3JCJ|1|g|G|683
3JCJ|1|g|U|684
3JCJ|1|g|G|685
3JCJ|1|g|U|686
3JCJ|1|g|A|687
3JCJ|1|g|G|688
*
3JCJ|1|g|C|699
3JCJ|1|g|G|700
3JCJ|1|g|U|701
3JCJ|1|g|A|702
3JCJ|1|g|G|703
3JCJ|1|g|A|704
3JCJ|1|g|G|705
3JCJ|1|g|A|706
3JCJ|1|g|U|707

Current chains

Chain g
16S ribosomal RNA

Nearby chains

Chain A
Large subunit ribosomal RNA; LSU rRNA
Chain q
30S ribosomal protein S11

Coloring options:


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