IL_3JCJ_146

3D structure

PDB id

3JCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

3JCJ|1|g|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCJ_146 not in the Motif Atlas

Homologous match to IL_4LFB_037

Geometric discrepancy: 0.1193

The information below is about IL_4LFB_037

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_61370.1

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

3JCJ|1|g|G|933
3JCJ|1|g|C|934
3JCJ|1|g|A|935
*
3JCJ|1|g|U|1380
3JCJ|1|g|U|1381
3JCJ|1|g|C|1382
3JCJ|1|g|C|1383
3JCJ|1|g|C|1384

Current chains

Chain g

16S ribosomal RNA

Nearby chains

Chain m

30S ribosomal protein S7

Chain o

30S ribosomal protein S9

Chain v

Transfer RNA; tRNA