IL_3JCJ_162

3D structure

PDB id

3JCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

3JCJ|1|g|C|1400, 3JCJ|1|g|A|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCJ_162 not in the Motif Atlas

Homologous match to IL_5J7L_058

Geometric discrepancy: 0.1364

The information below is about IL_5J7L_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

3JCJ|1|g|C|1399
3JCJ|1|g|C|1400
3JCJ|1|g|G|1401
*
3JCJ|1|g|C|1501
3JCJ|1|g|A|1502
3JCJ|1|g|A|1503
3JCJ|1|g|G|1504

Current chains

Chain g

16S ribosomal RNA

Nearby chains

Chain 4

messenger RNA

Chain k

30S ribosomal protein S5

Chain v

Transfer RNA; tRNA