IL_3JCJ_187

3D structure

PDB id

3JCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GCUAU*AAAUGC

Length

11 nucleotides

Bulged bases

3JCJ|1|A|U|1554

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCJ_187 not in the Motif Atlas

Geometric match to IL_5J7L_300

Geometric discrepancy: 0.3563

The information below is about IL_5J7L_300

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_38862.4

Basepair signature

cWW-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

3JCJ|1|A|G|1436
3JCJ|1|A|C|1437
3JCJ|1|A|U|1438
3JCJ|1|A|A|1439
3JCJ|1|A|U|1440
*
3JCJ|1|A|A|1551
3JCJ|1|A|A|1552
3JCJ|1|A|A|1553
3JCJ|1|A|U|1554
3JCJ|1|A|G|1555
3JCJ|1|A|C|1556

Current chains

Chain A

23S ribosomal RNA

Nearby chains