IL_3JCJ_195

3D structure

PDB id

3JCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCJ_195 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0991

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

3JCJ|1|A|U|1851
3JCJ|1|A|U|1852
3JCJ|1|A|A|1853
3JCJ|1|A|A|1854
3JCJ|1|A|U|1855
3JCJ|1|A|U|1856
3JCJ|1|A|G|1857
3JCJ|1|A|A|1858
3JCJ|1|A|U|1859
3JCJ|1|A|G|1860
*
3JCJ|1|A|U|1882
3JCJ|1|A|U|1883
3JCJ|1|A|G|1884
3JCJ|1|A|A|1885
3JCJ|1|A|U|1886
3JCJ|1|A|C|1887
3JCJ|1|A|G|1888
3JCJ|1|A|A|1889
3JCJ|1|A|A|1890
3JCJ|1|A|G|1891

Current chains

Chain A

23S ribosomal RNA

Nearby chains