IL_3JCN_016

3D structure

PDB id

3JCN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association: Initiation Complex I

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

3JCN|1|A|G|801, 3JCN|1|A|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCN_016 not in the Motif Atlas

Geometric match to IL_5J7L_260

Geometric discrepancy: 0.1221

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

3JCN|1|A|G|674
3JCN|1|A|A|675
3JCN|1|A|A|676
3JCN|1|A|A|677
3JCN|1|A|C|678
*
3JCN|1|A|G|799
3JCN|1|A|A|800
3JCN|1|A|G|801
3JCN|1|A|A|802
3JCN|1|A|U|803
3JCN|1|A|A|804
3JCN|1|A|G|805
3JCN|1|A|C|806

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain L

50S ribosomal protein L15