IL_3JCN_030

3D structure

PDB id

3JCN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association: Initiation Complex I

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GGG*UUAC

Length

7 nucleotides

Bulged bases

3JCN|1|A|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCN_030 not in the Motif Atlas

Geometric match to IL_3TD0_005

Geometric discrepancy: 0.2642

The information below is about IL_3TD0_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

3JCN|1|A|G|880
3JCN|1|A|G|881
3JCN|1|A|G|882
*
3JCN|1|A|U|894
3JCN|1|A|U|895
3JCN|1|A|A|896
3JCN|1|A|C|897

Current chains

Chain A

23S ribosomal RNA

Nearby chains