IL_3JCN_037

3D structure

PDB id

3JCN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association: Initiation Complex I

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

3JCN|1|A|U|1033

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCN_037 not in the Motif Atlas

Homologous match to IL_4WF9_041

Geometric discrepancy: 0.1076

The information below is about IL_4WF9_041

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_76400.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

3JCN|1|A|G|1031
3JCN|1|A|A|1032
3JCN|1|A|U|1033
3JCN|1|A|G|1034
*
3JCN|1|A|C|1121
3JCN|1|A|G|1122
3JCN|1|A|C|1123

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain B

5S ribosomal RNA; 5S rRNA

Chain M

50S ribosomal protein L16