IL_3JCN_084

3D structure

PDB id

3JCN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association: Initiation Complex I

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GGAGG*CCGACCUUGAAAUAC

Length

20 nucleotides

Bulged bases

3JCN|1|A|U|2172

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCN_084 not in the Motif Atlas

Homologous match to IL_5J7L_329

Geometric discrepancy: 0.3144

The information below is about IL_5J7L_329

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_87290.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L

Number of instances in this motif group

1

Unit IDs

3JCN|1|A|G|2124
3JCN|1|A|G|2125
3JCN|1|A|A|2126
3JCN|1|A|G|2127
3JCN|1|A|G|2128
*
3JCN|1|A|C|2160
3JCN|1|A|C|2161
3JCN|1|A|G|2162
3JCN|1|A|A|2163
3JCN|1|A|C|2164
3JCN|1|A|C|2165
3JCN|1|A|U|2166
3JCN|1|A|U|2167
3JCN|1|A|G|2168
3JCN|1|A|A|2169
3JCN|1|A|A|2170
3JCN|1|A|A|2171
3JCN|1|A|U|2172
3JCN|1|A|A|2173
3JCN|1|A|C|2174

Current chains

Chain A

23S ribosomal RNA

Nearby chains