IL_3JCN_099

3D structure

PDB id

3JCN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association: Initiation Complex I

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCN_099 not in the Motif Atlas

Geometric match to IL_7RQB_103

Geometric discrepancy: 0.0915

The information below is about IL_7RQB_103

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

3JCN|1|A|C|2652
3JCN|1|A|U|2653
3JCN|1|A|A|2654
3JCN|1|A|G|2655
3JCN|1|A|U|2656
3JCN|1|A|A|2657
3JCN|1|A|C|2658
*
3JCN|1|A|G|2663
3JCN|1|A|G|2664
3JCN|1|A|A|2665
3JCN|1|A|C|2666
3JCN|1|A|C|2667
3JCN|1|A|G|2668

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L6

Chain b

Translation initiation factor IF-2