IL_3JCN_124

3D structure

PDB id

3JCN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association: Initiation Complex I

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

3JCN|1|a|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCN_124 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.106

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

3JCN|1|a|G|147
3JCN|1|a|G|148
3JCN|1|a|A|149
3JCN|1|a|U|150
3JCN|1|a|A|151
3JCN|1|a|A|152
3JCN|1|a|C|153
*
3JCN|1|a|G|168
3JCN|1|a|C|169
3JCN|1|a|U|170
3JCN|1|a|A|171
3JCN|1|a|A|172
3JCN|1|a|U|173
3JCN|1|a|A|174
3JCN|1|a|C|175

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain x

30S ribosomal protein S20