IL_3JCN_155

3D structure

PDB id

3JCN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association: Initiation Complex I

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

3JCN|1|a|C|1054

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCN_155 not in the Motif Atlas

Homologous match to IL_4LFB_044

Geometric discrepancy: 0.0864

The information below is about IL_4LFB_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_82453.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

3JCN|1|a|U|1052
3JCN|1|a|G|1053
3JCN|1|a|C|1054
3JCN|1|a|A|1055
3JCN|1|a|U|1056
*
3JCN|1|a|A|1204
3JCN|1|a|U|1205
3JCN|1|a|G|1206

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain c

30S ribosomal protein S3

Chain m

30S ribosomal protein S10

Chain q

30S ribosomal protein S14