IL_3JCN_183

3D structure

PDB id

3JCN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association: Initiation Complex I

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCN_183 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0828

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

3JCN|1|A|U|1851
3JCN|1|A|U|1852
3JCN|1|A|A|1853
3JCN|1|A|A|1854
3JCN|1|A|U|1855
3JCN|1|A|U|1856
3JCN|1|A|G|1857
3JCN|1|A|A|1858
3JCN|1|A|U|1859
3JCN|1|A|G|1860
*
3JCN|1|A|U|1882
3JCN|1|A|U|1883
3JCN|1|A|G|1884
3JCN|1|A|A|1885
3JCN|1|A|U|1886
3JCN|1|A|C|1887
3JCN|1|A|G|1888
3JCN|1|A|A|1889
3JCN|1|A|A|1890
3JCN|1|A|G|1891

Current chains

Chain A

23S ribosomal RNA

Nearby chains