IL_3JCS_003
3D structure
- PDB id
- 3JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GUG*UAUUC
- Length
- 8 nucleotides
- Bulged bases
- 3JCS|1|7|U|157, 3JCS|1|7|U|158
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JCS_003 not in the Motif Atlas
- Geometric match to IL_3LA5_001
- Geometric discrepancy: 0.2869
- The information below is about IL_3LA5_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_86319.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 269
Unit IDs
3JCS|1|1|G|11
3JCS|1|1|U|12
3JCS|1|1|G|13
*
3JCS|1|7|U|155
3JCS|1|7|A|156
3JCS|1|7|U|157
3JCS|1|7|U|158
3JCS|1|7|C|159
Current chains
- Chain 1
- 26S alpha ribosomal RNA
- Chain 7
- 5.8S ribosomal RNA
Nearby chains
- Chain G
- ribosomal protein L8e
- Chain M
- ribosomal protein L15e
- Chain V
- ribosomal protein L23
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