IL_3JCS_005
3D structure
- PDB id
- 3JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CUCAGUGAG*CGAAGAG
- Length
- 16 nucleotides
- Bulged bases
- 3JCS|1|1|G|86
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JCS_005 not in the Motif Atlas
- Homologous match to IL_8C3A_006
- Geometric discrepancy: 0.1064
- The information below is about IL_8C3A_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_88613.1
- Basepair signature
- cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
3JCS|1|1|C|80
3JCS|1|1|U|81
3JCS|1|1|C|82
3JCS|1|1|A|83
3JCS|1|1|G|84
3JCS|1|1|U|85
3JCS|1|1|G|86
3JCS|1|1|A|87
3JCS|1|1|G|88
*
3JCS|1|1|C|96
3JCS|1|1|G|97
3JCS|1|1|A|98
3JCS|1|1|A|99
3JCS|1|1|G|100
3JCS|1|1|A|101
3JCS|1|1|G|102
Current chains
- Chain 1
- 26S alpha ribosomal RNA
Nearby chains
- Chain 2
- Large subunit ribosomal RNA; LSU rRNA
- Chain C
- ribosomal protein L4
- Chain I
- ribosomal protein L13e
- Chain L
- ribosomal protein L15
- Chain M
- ribosomal protein L15e
- Chain P
- ribosomal protein L18e
- Chain n
- ribosomal protein L44e
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