IL_3JCS_008

3D structure

PDB id

3JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CG*UUG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCS_008 not in the Motif Atlas

Geometric match to IL_6JQ6_004

Geometric discrepancy: 0.2789

The information below is about IL_6JQ6_004

Detailed Annotation

Stack outside cWW

Broad Annotation

Stack outside cWW

Motif group

IL_77710.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

26

Unit IDs

3JCS|1|1|C|124
3JCS|1|1|G|125
*
3JCS|1|1|U|140
3JCS|1|1|U|141
3JCS|1|1|G|142

Current chains

Chain 1

26S alpha ribosomal RNA

Nearby chains

Chain 7

5.8S ribosomal RNA; 5.8S rRNA

Chain G

ribosomal protein L8e

Chain M

ribosomal protein L15e

Chain a

ribosomal protein L29