IL_3JCS_017
3D structure
- PDB id
- 3JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CUGAAG*UGGAUG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JCS_017 not in the Motif Atlas
- Geometric match to IL_4LFB_055
- Geometric discrepancy: 0.1815
- The information below is about IL_4LFB_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_85536.2
- Basepair signature
- cWW-tSH-L-R-tHS-cWW-cWW
- Number of instances in this motif group
- 8
Unit IDs
3JCS|1|1|C|445
3JCS|1|1|U|446
3JCS|1|1|G|447
3JCS|1|1|A|448
3JCS|1|1|A|449
3JCS|1|1|G|450
*
3JCS|1|7|U|13
3JCS|1|7|G|14
3JCS|1|7|G|15
3JCS|1|7|A|16
3JCS|1|7|U|17
3JCS|1|7|G|18
Current chains
- Chain 1
- 26S alpha ribosomal RNA
- Chain 7
- 5.8S ribosomal RNA
Nearby chains
- Chain C
- ribosomal protein L4
- Chain T
- ribosomal protein L22
- Chain f
- ribosomal protein L32e
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