IL_3JCS_019
3D structure
- PDB id
- 3JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GAAG*CCCC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JCS_019 not in the Motif Atlas
- Geometric match to IL_1L9A_005
- Geometric discrepancy: 0.2436
- The information below is about IL_1L9A_005
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
3JCS|1|1|G|468
3JCS|1|1|A|469
3JCS|1|1|A|470
3JCS|1|1|G|471
*
3JCS|1|1|C|662
3JCS|1|1|C|663
3JCS|1|1|C|664
3JCS|1|1|C|665
Current chains
- Chain 1
- 26S alpha ribosomal RNA
Nearby chains
- Chain 2
- Large subunit ribosomal RNA; LSU rRNA
- Chain H
- ribosomal protein L13
- Chain f
- ribosomal protein L32e
- Chain g
- ribosomal protein L33e
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