IL_3JCS_020

3D structure

PDB id

3JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UCC*GG

Length

5 nucleotides

Bulged bases

3JCS|1|1|C|477

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCS_020 not in the Motif Atlas

Geometric match to IL_5TBW_002

Geometric discrepancy: 0.3998

The information below is about IL_5TBW_002

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.13

Basepair signature

cWW-L-cWW

Number of instances in this motif group

40

Unit IDs

3JCS|1|1|U|476
3JCS|1|1|C|477
3JCS|1|1|C|478
*
3JCS|1|1|G|656
3JCS|1|1|G|657

Current chains

Chain 1

26S alpha ribosomal RNA

Nearby chains

Chain f

ribosomal protein L32e

Chain g

ribosomal protein L33e