IL_3JCS_032
3D structure
- PDB id
- 3JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UGAAG*UGGAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JCS_032 not in the Motif Atlas
- Homologous match to IL_8C3A_033
- Geometric discrepancy: 0.1351
- The information below is about IL_8C3A_033
- Detailed Annotation
- Triple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_95716.2
- Basepair signature
- cWW-cWW-tHS-tHS-tSH-cWW
- Number of instances in this motif group
- 18
Unit IDs
3JCS|1|1|U|885
3JCS|1|1|G|886
3JCS|1|1|A|887
3JCS|1|1|A|888
3JCS|1|1|G|889
*
3JCS|1|1|U|906
3JCS|1|1|G|907
3JCS|1|1|G|908
3JCS|1|1|A|909
3JCS|1|1|G|910
Current chains
- Chain 1
- 26S alpha ribosomal RNA
Nearby chains
- Chain 2
- Large subunit ribosomal RNA; LSU rRNA
- Chain 3
- 26S gamma ribosomal RNA
- Chain A
- ribosomal protein L2
- Chain Q
- ribosomal protein L19e
- Chain m
- ribosomal protein L43e
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