IL_3JCS_036
3D structure
- PDB id
- 3JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- G(OMG)A*UCAUC
- Length
- 8 nucleotides
- Bulged bases
- 3JCS|1|1|C|971, 3JCS|1|1|A|972
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JCS_036 not in the Motif Atlas
- Geometric match to IL_5J7L_265
- Geometric discrepancy: 0.1918
- The information below is about IL_5J7L_265
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_06549.2
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
3JCS|1|1|G|958
3JCS|1|1|OMG|959
3JCS|1|1|A|960
*
3JCS|1|1|U|970
3JCS|1|1|C|971
3JCS|1|1|A|972
3JCS|1|1|U|973
3JCS|1|1|C|974
Current chains
- Chain 1
- 26S alpha ribosomal RNA
Nearby chains
- Chain 2
- Large subunit ribosomal RNA; LSU rRNA
- Chain A
- ribosomal protein L2
- Chain M
- ribosomal protein L15e
- Chain T
- ribosomal protein L22
- Chain j
- ribosomal protein L37e
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