IL_3JCS_047

3D structure

PDB id

3JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AUGUGG*CCCAUU

Length

12 nucleotides

Bulged bases

3JCS|1|1|U|1401

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JCS|1|1|A|1224
3JCS|1|1|U|1225
3JCS|1|1|G|1226
3JCS|1|1|U|1227
3JCS|1|1|G|1228
3JCS|1|1|G|1229
*
3JCS|1|1|C|1397
3JCS|1|1|C|1398
3JCS|1|1|C|1399
3JCS|1|1|A|1400
3JCS|1|1|U|1401
3JCS|1|1|U|1402

Current chains

Chain 1

26S alpha ribosomal RNA

Nearby chains

Chain 8

5S ribosomal RNA; 5S rRNA

Chain P

ribosomal protein L18e

Chain c

ribosomal protein L30

Chain f

ribosomal protein L32e

Chain g

ribosomal protein L33e