IL_3JCS_060
3D structure
- PDB id
- 3JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GGCGU(A2M)(OMG)C*GCGAAAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: A2M, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JCS_060 not in the Motif Atlas
- Geometric match to IL_4V9F_012
- Geometric discrepancy: 0.2578
- The information below is about IL_4V9F_012
- Detailed Annotation
- 8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_59724.1
- Basepair signature
- cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
3JCS|1|1|G|1536
3JCS|1|1|G|1537
3JCS|1|1|C|1538
3JCS|1|1|G|1539
3JCS|1|1|U|1540
3JCS|1|1|A2M|1541
3JCS|1|1|OMG|1542
3JCS|1|1|C|1543
*
3JCS|1|2|G|599
3JCS|1|2|C|600
3JCS|1|2|G|601
3JCS|1|2|A|602
3JCS|1|2|A|603
3JCS|1|2|A|604
3JCS|1|2|C|605
Current chains
- Chain 1
- 26S alpha ribosomal RNA
- Chain 2
- 26S delta ribosomal RNA
Nearby chains
- Chain C
- ribosomal protein L4
- Chain T
- ribosomal protein L22
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