IL_3JCS_065
3D structure
- PDB id
- 3JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UG*CAAAAA
- Length
- 8 nucleotides
- Bulged bases
- 3JCS|1|1|A|1765
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JCS_065 not in the Motif Atlas
- Geometric match to IL_1R3E_001
- Geometric discrepancy: 0.2671
- The information below is about IL_1R3E_001
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_84476.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 13
Unit IDs
3JCS|1|1|U|1749
3JCS|1|1|G|1750
*
3JCS|1|1|C|1762
3JCS|1|1|A|1763
3JCS|1|1|A|1764
3JCS|1|1|A|1765
3JCS|1|1|A|1766
3JCS|1|1|A|1767
Current chains
- Chain 1
- 26S alpha ribosomal RNA
Nearby chains
- Chain 3
- 26S gamma ribosomal RNA
- Chain V
- ribosomal protein L23
- Chain h
- ribosomal protein L34e
- Chain k
- ribosomal protein L38e
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