IL_3JCS_073

3D structure

PDB id

3JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGUAAG*CAAGAAG

Length

13 nucleotides

Bulged bases

3JCS|1|2|G|115

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_95863.1

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

3JCS|1|2|C|102
3JCS|1|2|G|103
3JCS|1|2|U|104
3JCS|1|2|A|105
3JCS|1|2|A|106
3JCS|1|2|G|107
*
3JCS|1|2|C|112
3JCS|1|2|A|113
3JCS|1|2|A|114
3JCS|1|2|G|115
3JCS|1|2|A|116
3JCS|1|2|A|117
3JCS|1|2|G|118

Current chains

Chain 2

26S delta ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain m

ribosomal protein L43e