IL_3JCS_075

3D structure

PDB id

3JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGGCA*UGCCAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83249.1

Basepair signature

cWW-L-R-R-R-L-L-L-cWW

Number of instances in this motif group

2

Unit IDs

3JCS|1|2|G|131
3JCS|1|2|G|132
3JCS|1|2|G|133
3JCS|1|2|C|134
3JCS|1|2|A|135
*
3JCS|1|2|U|343
3JCS|1|2|G|344
3JCS|1|2|C|345
3JCS|1|2|C|346
3JCS|1|2|A|348
3JCS|1|2|C|349

Current chains

Chain 2

26S delta ribosomal RNA

Nearby chains

Chain 3

26S gamma ribosomal RNA

Chain Q

ribosomal protein L19e