IL_3JCS_079

3D structure

PDB id

3JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

3JCS|1|2|A|488, 3JCS|1|2|A|489

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCS_079 not in the Motif Atlas

Homologous match to IL_8C3A_090

Geometric discrepancy: 0.1833

The information below is about IL_8C3A_090

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

3JCS|1|2|U|446
3JCS|1|2|G|447
*
3JCS|1|2|U|487
3JCS|1|2|A|488
3JCS|1|2|A|489
3JCS|1|2|A|490

Current chains

Chain 2

26S delta ribosomal RNA

Nearby chains

Chain A

ribosomal protein L2