IL_3JCS_080

3D structure

PDB id

3JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUGAAUG*CGCG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69914.1

Basepair signature

cWW-L-L-L-tHS-L-R-cWW

Number of instances in this motif group

8

Unit IDs

3JCS|1|2|C|450
3JCS|1|2|U|451
3JCS|1|2|G|452
3JCS|1|2|A|453
3JCS|1|2|A|454
3JCS|1|2|U|455
3JCS|1|2|G|456
*
3JCS|1|2|C|481
3JCS|1|2|G|482
3JCS|1|2|C|483
3JCS|1|2|G|484

Current chains

Chain 2

26S delta ribosomal RNA

Nearby chains

Chain A

ribosomal protein L2