Motif IL_69914.1 Version IL_69914.1 of this group appears in releases 2.0 to 2.0

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	Chain(s)	Standardized name		1		2		3		4		5		6		7	break		8		9		10		11	1-11	2-10	5-10	6-9	6-10	7-8
1	IL_4V19_026	4V19	0.3480	A	LSU rRNA	U	784	U	785	A	786	A	787	A	788	A	789	G	790	*	C	996	C	997	A	998	A	999	cWW	cWW		ncWW		cWW
2	IL_5AJ0_113	5AJ0	0.1237	A2	LSU rRNA	A	2811	A	2812	C	2813	A	2814	A	2815	U	2816	G	2817	*	C	3821	U	3822	A	3823	U	3824	cWW		tHS			cWW
3	IL_4V91_080	4V91	0.0856	1	LSU rRNA	A	1883	A	1884	U	1885	A	1886	A	1887	U	1888	G	1889	*	C	2346	U	2347	A	2348	U	2349	cWW		tHS	ncWw		cWW
4	IL_4V88_323	4V88	0.0000	A5	LSU rRNA	A	1883	A	1884	U	1885	A	1886	A	1887	U	1888	G	1889	*	C	2346	U	2347	A	2348	U	2349	cWW		tHS			cWW
5	IL_4V8P_380	4V8P	0.1164	F1	LSU rRNA	A	1907	A	1908	C	1909	A	1910	A	1911	U	1912	G	1913	*	C	2341	U	2342	A	2343	U	2344	cWW		tHS			cWW
6	IL_3J7P_092	3J7P	0.1250	5	LSU rRNA	A	2832	A	2833	C	2834	A	2835	A	2836	U	2837	G	2838	*	C	3850	U	3851	A	3852	U	3853	cWW		ntHS			cWW
7	IL_3NDB_002	3NDB	0.4492	M	SRP RNA	G	247	G	248	G	249	G	250	U	251	G	252	C	253	*	G	128	U	129	C	130	C	131	cWW				ncWS	cWW
8	IL_3JCS_080	3JCS	0.9084	2	LSU rRNA	C	450	U	451	G	452	A	453	A	454	U	455	G	456	*	C	481	G	482	C	483	G	484	cWW	ncWW				cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
AACAAUG*CUAU	3
AAUAAUG*CUAU	2
UUAAAAG*CCAA	1
GGGGUGC*GUCC	1
CUGAAUG*CGCG	1

Non-Watson-Crick part of the motif

Sequence	Counts
ACAAU*UA	3
AUAAU*UA	2
UAAAA*CA	1
GGGUG*UC	1
UGAAU*GC	1

Release history

Release	2.0
Date	2017-04-24
Status	New id, no parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (8)
Basepair signature: cWW-L-L-L-tHS-L-R-cWW
Heat map statistics: Min 0.09 | Avg 0.38 | Max 0.95

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Coloring options: Nucleotide numbers

Motif IL_69914.1 Version IL_69914.1 of this group appears in releases 2.0 to 2.0 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_69914.1 Version IL_69914.1 of this group appears in releases 2.0 to 2.0

Download

Csv

Json