IL_3JCS_087

3D structure

PDB id

3JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

U(OMG)(OMU)U*ACA

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG, OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCS_087 not in the Motif Atlas

Geometric match to IL_353D_001

Geometric discrepancy: 0.1619

The information below is about IL_353D_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

3JCS|1|2|U|654
3JCS|1|2|OMG|655
3JCS|1|2|OMU|656
3JCS|1|2|U|657
*
3JCS|1|2|A|1250
3JCS|1|2|C|1251
3JCS|1|2|A|1252

Current chains

Chain 2

26S delta ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain C

ribosomal protein L4

Chain L

ribosomal protein L15