IL_3JCS_100
3D structure
- PDB id
- 3JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GCGA*UACC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JCS_100 not in the Motif Atlas
- Geometric match to IL_2OE8_002
- Geometric discrepancy: 0.287
- The information below is about IL_2OE8_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_51479.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 10
Unit IDs
3JCS|1|2|G|1197
3JCS|1|2|C|1198
3JCS|1|2|G|1199
3JCS|1|2|A|1213
*
3JCS|1|2|U|1225
3JCS|1|2|A|1226
3JCS|1|2|C|1227
3JCS|1|2|C|1228
Current chains
- Chain 2
- 26S delta ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain L
- ribosomal protein L15
- Chain P
- ribosomal protein L18e
- Chain n
- ribosomal protein L44e
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