IL_3JCS_105

3D structure

PDB id

3JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CU*AACG

Length

6 nucleotides

Bulged bases

3JCS|1|2|A|1380, 3JCS|1|2|C|1381

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57598.1

Basepair signature

cWW-cWW

Number of instances in this motif group

400

Unit IDs

3JCS|1|2|C|1320
3JCS|1|2|U|1321
*
3JCS|1|2|A|1379
3JCS|1|2|A|1380
3JCS|1|2|C|1381
3JCS|1|2|G|1382

Current chains

Chain 2

26S delta ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain 4

Large subunit ribosomal RNA; LSU rRNA

Chain B

ribosomal protein L3

Chain H

ribosomal protein L13

Chain J

ribosomal protein L14