IL_3JCS_127
3D structure
- PDB id
- 3JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GUUAGUAC*GGAACCC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JCS_127 not in the Motif Atlas
- Homologous match to IL_5TBW_377
- Geometric discrepancy: 0.2472
- The information below is about IL_5TBW_377
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
3JCS|1|8|G|73
3JCS|1|8|U|74
3JCS|1|8|U|75
3JCS|1|8|A|76
3JCS|1|8|G|77
3JCS|1|8|U|78
3JCS|1|8|A|79
3JCS|1|8|C|80
*
3JCS|1|8|G|100
3JCS|1|8|G|101
3JCS|1|8|A|102
3JCS|1|8|A|103
3JCS|1|8|C|104
3JCS|1|8|C|105
3JCS|1|8|C|106
Current chains
- Chain 8
- 5S ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain N
- ribosomal protein L16
- Chain O
- ribosomal protein L18
- Chain R
- ribosomal protein L20e
- Chain c
- ribosomal protein L30
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