IL_3JCS_128
3D structure
- PDB id
- 3JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GGUC*GAC
- Length
- 7 nucleotides
- Bulged bases
- 3JCS|1|8|U|86
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JCS_128 not in the Motif Atlas
- Homologous match to IL_5TBW_378
- Geometric discrepancy: 0.1641
- The information below is about IL_5TBW_378
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
3JCS|1|8|G|84
3JCS|1|8|G|85
3JCS|1|8|U|86
3JCS|1|8|C|87
*
3JCS|1|8|G|94
3JCS|1|8|A|95
3JCS|1|8|C|96
Current chains
- Chain 8
- 5S ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain N
- ribosomal protein L16
- Chain R
- ribosomal protein L20e
- Chain c
- ribosomal protein L30
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