IL_3JCS_152

3D structure

PDB id

3JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

(OMC)UC*GUGAG

Length

8 nucleotides

Bulged bases

3JCS|1|2|G|1384, 3JCS|1|2|A|1385

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCS_152 not in the Motif Atlas

Homologous match to IL_8C3A_116

Geometric discrepancy: 0.1754

The information below is about IL_8C3A_116

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

3JCS|1|2|OMC|1318
3JCS|1|2|U|1319
3JCS|1|2|C|1320
*
3JCS|1|2|G|1382
3JCS|1|2|U|1383
3JCS|1|2|G|1384
3JCS|1|2|A|1385
3JCS|1|2|G|1386

Current chains

Chain 2

26S delta ribosomal RNA

Nearby chains

Chain B

ribosomal protein L3

Chain J

ribosomal protein L14