IL_3JCS_157

3D structure

PDB id

3JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GU*AUUC

Length

6 nucleotides

Bulged bases

3JCS|1|7|U|157, 3JCS|1|7|U|158

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCS_157 not in the Motif Atlas

Geometric match to IL_6JXM_001

Geometric discrepancy: 0.1243

The information below is about IL_6JXM_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

3JCS|1|1|G|11
3JCS|1|1|U|12
*
3JCS|1|7|A|156
3JCS|1|7|U|157
3JCS|1|7|U|158
3JCS|1|7|C|159

Current chains

Chain 1

26S alpha ribosomal RNA

Chain 7

5.8S ribosomal RNA

Nearby chains

Chain M

ribosomal protein L15e

Chain V

ribosomal protein L23