IL_3JCS_164
3D structure
- PDB id
- 3JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- AUAAU*AAAAAU
- Length
- 11 nucleotides
- Bulged bases
- 3JCS|1|3|A|148
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JCS_164 not in the Motif Atlas
- Geometric match to IL_8CRE_076
- Geometric discrepancy: 0.18
- The information below is about IL_8CRE_076
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_00981.1
- Basepair signature
- cWW-tWH-tHH-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
3JCS|1|3|A|67
3JCS|1|3|U|68
3JCS|1|3|A|69
3JCS|1|3|A|70
3JCS|1|3|U|71
*
3JCS|1|3|A|144
3JCS|1|3|A|145
3JCS|1|3|A|146
3JCS|1|3|A|147
3JCS|1|3|A|148
3JCS|1|3|U|149
Current chains
- Chain 3
- 26S gamma ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain h
- ribosomal protein L34e
- Chain k
- ribosomal protein L38e
Coloring options: