IL_3JCT_056
3D structure
- PDB id
- 3JCT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-em structure of eukaryotic pre-60S ribosomal subunits
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.08 Å
Loop
- Sequence
- GGAU*GUUUUC
- Length
- 10 nucleotides
- Bulged bases
- 3JCT|1|1|U|1820, 3JCT|1|1|U|1821
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JCT_056 not in the Motif Atlas
- Homologous match to IL_5TBW_065
- Geometric discrepancy: 0.3364
- The information below is about IL_5TBW_065
- Detailed Annotation
- Multiple bulged bases with near cWW
- Broad Annotation
- Multiple bulged bases with near cWW
- Motif group
- IL_58686.2
- Basepair signature
- cWW-cWW-L-R-cSH-cWW
- Number of instances in this motif group
- 6
Unit IDs
3JCT|1|1|G|1623
3JCT|1|1|G|1624
3JCT|1|1|A|1625
3JCT|1|1|U|1626
*
3JCT|1|1|G|1817
3JCT|1|1|U|1818
3JCT|1|1|U|1819
3JCT|1|1|U|1820
3JCT|1|1|U|1821
3JCT|1|1|C|1822
Current chains
- Chain 1
- RDN25-1 rRNA
Nearby chains
- Chain Z
- 60S ribosomal protein L27-A
- Chain g
- 60S ribosomal protein L34-A
- Chain k
- 60S ribosomal protein L38
- Chain n
- Pescadillo homolog
- Chain q
- Ribosome biogenesis protein NOP53
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