IL_3JD5_013

3D structure

PDB id

3JD5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the small subunit of the mammalian mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

AAACU*ACUAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JD5_013 not in the Motif Atlas

Geometric match to IL_4V88_418

Geometric discrepancy: 0.3492

The information below is about IL_4V88_418

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

3JD5|1|A|A|413
3JD5|1|A|A|414
3JD5|1|A|A|415
3JD5|1|A|C|416
3JD5|1|A|U|417
*
3JD5|1|A|A|433
3JD5|1|A|C|434
3JD5|1|A|U|435
3JD5|1|A|A|436
3JD5|1|A|U|437

Current chains

Chain A

28S ribosomal RNA, mitochondial

Nearby chains

Chain K

28S ribosomal protein S11, mitochondrial

Chain U

28S ribosomal protein S21, mitochondrial

Chain n

Aurora kinase A interacting protein 1