IL_3JYV_054

3D structure

PDB id

3JYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 40S rRNA and proteins and P/E tRNA for eukaryotic ribosome based on cryo-EM map of Thermomyces lanuginosus ribosome at 8.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JYV_054 not in the Motif Atlas

Geometric match to IL_4LFB_034

Geometric discrepancy: 0.1282

The information below is about IL_4LFB_034

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_84044.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

3JYV|1|A|G|1108
3JYV|1|A|G|1109
3JYV|1|A|A|1110
3JYV|1|A|G|1111
3JYV|1|A|U|1112
3JYV|1|A|A|1113
3JYV|1|A|U|1114
3JYV|1|A|G|1115
*
3JYV|1|A|U|1126
3JYV|1|A|G|1127
3JYV|1|A|A|1128
3JYV|1|A|A|1129
3JYV|1|A|A|1130
3JYV|1|A|C|1131

Current chains

Chain A

18S rRNA

Nearby chains

Chain L

40S ribosomal protein S23(A)