IL_3K0J_001
3D structure
- PDB id
- 3K0J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the E. coli ThiM riboswitch in complex with thiamine pyrophosphate and the U1A crystallization module
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GGUG*CUGAGAAAAC*C
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3K0J_001 not in the Motif Atlas
- Geometric match to IL_7TZS_009
- Geometric discrepancy: 0.2989
- The information below is about IL_7TZS_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44624.1
- Basepair signature
- cWW-tWH-cWW-L-cWW-tSS-cSS-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
3K0J|1|E|G|13
3K0J|1|E|G|14
3K0J|1|E|U|15
3K0J|1|E|G|16
*
3K0J|1|E|C|38
3K0J|1|E|U|39
3K0J|1|E|G|40
3K0J|1|E|A|41
3K0J|1|E|G|42
3K0J|1|E|A|43
3K0J|1|E|A|44
3K0J|1|E|A|45
3K0J|1|E|A|47
3K0J|1|E|C|48
*
3K0J|1|E|C|48
Current chains
- Chain E
- RNA (87-MER)
Nearby chains
- Chain A
- U1 small nuclear ribonucleoprotein A
Coloring options: