Motif IL_44624.1 Version IL_44624.1 of this group appears in releases 3.88 to 3.98
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | break | 11 | 12 | 13 | 14 | 1-14 | 2-6 | 4-10 | 5-12 | 8-13 | 9-12 | 10-11 | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_7TZS_009 | 7TZS | 0.0000 | 1 | X | TPP riboswitch (THI element) | C | 38 | U | 39 | G | 40 | A | 41 | G | 42 | A | 43 | A | 44 | A | 45 | A | 47 | C | 48 | * | G | 18 | G | 19 | U | 20 | G | 21 | cWW | tWH | csS | tSS | cWW | cWW | cWW |
| 2 | IL_8F4O_009 | 8F4O | 0.3097 | 1 | B | TPP riboswitch (THI element) | C | 38 | U | 39 | G | 40 | A | 41 | G | 42 | A | 43 | A | 44 | A | 45 | A | 47 | C | 48 | * | G | 18 | G | 19 | U | 20 | G | 21 | cWW | ntWH | csS | tSS | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUGAGAAAUAC*GGUG | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGAGAAAUA*GU | 2 |
Release history
| Release | 3.88 | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 | 3.97 | 3.98 |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2024-09-11 | 2024-10-09 | 2024-11-06 | 2024-12-04 | 2025-01-01 | 2025-01-29 | 2025-02-26 | 2025-03-26 | 2025-04-23 | 2025-05-21 | 2025-06-18 |
| Status | New id, no parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-tWH-cWW-L-cWW-tSS-cSS-cWW-L
- Heat map statistics
- Min 0.31 | Avg 0.15 | Max 0.31
Coloring options: