IL_3K0J_005

3D structure

PDB id

3K0J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ThiM riboswitch in complex with thiamine pyrophosphate and the U1A crystallization module

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UG*CUGAGAAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3K0J_005 not in the Motif Atlas

Geometric match to IL_7TZS_002

Geometric discrepancy: 0.2618

The information below is about IL_7TZS_002

Detailed Annotation

Stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_38394.1

Basepair signature

cWW-tWH-cWW-L-L-R-L

Number of instances in this motif group

2

Unit IDs

3K0J|1|F|U|115
3K0J|1|F|G|116
*
3K0J|1|F|C|138
3K0J|1|F|U|139
3K0J|1|F|G|140
3K0J|1|F|A|141
3K0J|1|F|G|142
3K0J|1|F|A|143
3K0J|1|F|A|144
3K0J|1|F|A|145

Current chains

Chain F

RNA (87-MER)

Nearby chains

Chain B

U1 small nuclear ribonucleoprotein A