IL_3K0J_007

3D structure

PDB id

3K0J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ThiM riboswitch in complex with thiamine pyrophosphate and the U1A crystallization module

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGAUC*GCGUA

Length

10 nucleotides

Bulged bases

3K0J|1|F|U|162, 3K0J|1|F|U|179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3K0J_007 not in the Motif Atlas

Geometric match to IL_3D2V_003

Geometric discrepancy: 0.1409

The information below is about IL_3D2V_003

Detailed Annotation

cWH basepair and non-canonical AC

Broad Annotation

No text annotation

Motif group

IL_38634.5

Basepair signature

cWW-cWH-L-R-cWW

Number of instances in this motif group

2

Unit IDs

3K0J|1|F|U|159
3K0J|1|F|G|160
3K0J|1|F|A|161
3K0J|1|F|U|162
3K0J|1|F|C|163
*
3K0J|1|F|G|176
3K0J|1|F|C|177
3K0J|1|F|G|178
3K0J|1|F|U|179
3K0J|1|F|A|180

Current chains

Chain F

RNA (87-MER)

Nearby chains

Chain B

U1 small nuclear ribonucleoprotein A

Chain D

U1 small nuclear ribonucleoprotein A