IL_3KTV_011

3D structure

PDB id

3KTV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the human SRP19/S-domain SRP RNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CCAGGU*GAGCAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3KTV_011 not in the Motif Atlas

Homologous match to IL_1MFQ_007

Geometric discrepancy: 0.1071

The information below is about IL_1MFQ_007

Detailed Annotation

tSH-tHW-tHS-cWW

Broad Annotation

No text annotation

Motif group

IL_35186.2

Basepair signature

cWW-tSH-tHW-L-R-cWW-cWW

Number of instances in this motif group

6

Unit IDs

3KTV|1|C|C|190
3KTV|1|C|C|191
3KTV|1|C|A|192
3KTV|1|C|G|193
3KTV|1|C|G|194
3KTV|1|C|U|195
*
3KTV|1|C|G|204
3KTV|1|C|A|205
3KTV|1|C|G|206
3KTV|1|C|C|207
3KTV|1|C|A|208
3KTV|1|C|G|209

Current chains

Chain C

SRP RNA

Nearby chains

Chain D

Signal recognition particle 19 kDa protein