IL_3KTV_012

3D structure

PDB id

3KTV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the human SRP19/S-domain SRP RNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CAAUAU*AGGUUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3KTV_012 not in the Motif Atlas

Geometric match to IL_5TBW_476

Geometric discrepancy: 0.29

The information below is about IL_5TBW_476

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

3KTV|1|A|C|129
3KTV|1|A|A|130
3KTV|1|A|A|131
3KTV|1|A|U|132
3KTV|1|A|A|133
3KTV|1|A|U|134
*
3KTV|1|A|A|163
3KTV|1|A|G|164
3KTV|1|A|G|165
3KTV|1|A|U|166
3KTV|1|A|U|167
3KTV|1|A|G|168

Current chains

Chain A

SRP RNA

Nearby chains

Chain D

Signal recognition particle 19 kDa protein