IL_3KTW_005

3D structure

PDB id

3KTW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the SRP19/S-domain SRP RNA complex of Sulfolobus solfataricus

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGU*AUUC

Length

7 nucleotides

Bulged bases

3KTW|1|D|U|179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3KTW_005 not in the Motif Atlas

Homologous match to IL_3KTW_002

Geometric discrepancy: 0.2985

The information below is about IL_3KTW_002

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_43275.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

30

Unit IDs

3KTW|1|D|G|152
3KTW|1|D|G|153
3KTW|1|D|U|154
*
3KTW|1|D|A|177
3KTW|1|D|U|178
3KTW|1|D|U|179
3KTW|1|D|C|180

Current chains

Chain D

SRP RNA

Nearby chains