IL_3NPQ_010
3D structure
- PDB id
- 3NPQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the S-adenosylhomocysteine riboswitch at 2.18 A
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.18 Å
Loop
- Sequence
- GGAGCGCUGC*GC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3NPQ_010 not in the Motif Atlas
- Geometric match to IL_3NPQ_004
- Geometric discrepancy: 0.0012
- The information below is about IL_3NPQ_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_18354.1
- Basepair signature
- cWW-L-cWW-L-L-R-L-R-L-R
- Number of instances in this motif group
- 2
Unit IDs
3NPQ|1|C|G|7
3NPQ|1|C|G|8
3NPQ|1|C|A|9
3NPQ|1|C|G|10
3NPQ|1|C|C|11
3NPQ|1|C|G|12
3NPQ|1|C|C|13
3NPQ|1|C|U|14
3NPQ|1|C|G|15
3NPQ|1|C|C|16
*
3NPQ|1|C|G|31
3NPQ|1|C|C|32
Current chains
- Chain C
- S-ADENOSYLHOMOCYSTEINE RIBOSWITCH
Nearby chains
- Chain B
- SAH (S-adenosyl-L-homocysteine) riboswitch aptamer
Coloring options: