IL_3OTO_031

3D structure

PDB id

3OTO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 30S ribosomal subunit from a KsgA mutant of Thermus thermophilus (HB8)

Experimental method

X-RAY DIFFRACTION

Resolution

3.69 Å

Loop

Sequence

GAGAG*UGGU

Length

9 nucleotides

Bulged bases

3OTO|1|A|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3OTO_031 not in the Motif Atlas

Homologous match to IL_4LFB_029

Geometric discrepancy: 0.0976

The information below is about IL_4LFB_029

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

3OTO|1|A|G|662
3OTO|1|A|A|663
3OTO|1|A|G|664
3OTO|1|A|A|665
3OTO|1|A|G|666
*
3OTO|1|A|U|740
3OTO|1|A|G|741
3OTO|1|A|G|742
3OTO|1|A|U|743

Current chains

Chain A

16S rRNA

Nearby chains

Chain F

30S RIBOSOMAL PROTEIN S6

Chain O

30S RIBOSOMAL PROTEIN S15

Chain R

30S RIBOSOMAL PROTEIN S18