IL_3P49_004

3D structure

PDB id

3P49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a Glycine Riboswitch from Fusobacterium nucleatum

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

UUCA*UGAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: UUCA,UGAA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3P49_004 not in the Motif Atlas

Geometric match to IL_3WBM_002

Geometric discrepancy: 0.1983

The information below is about IL_3WBM_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

3P49|1|A|U|16
3P49|1|A|U|17
3P49|1|A|C|18
3P49|1|A|A|19
*
3P49|1|A|U|26
3P49|1|A|G|27
3P49|1|A|A|28
3P49|1|A|A|29

Current chains

Chain A

GLYCINE RIBOSWITCH

Nearby chains

Chain B

U1 small nuclear ribonucleoprotein A